Publications

Dernières publications

• 2022 PIGNAL M., LAUDEREAU C., GÂTEBLÉ G. & LAUDEREAU P.-L. 2022. — Dendrobium petrophilum (Kraenzl.) Garay ex N.Hallé, a well-named species describing its unusual chasmophytic ecology. Adansonia 44 (1): 1-9. https://doi.org/10.5252/adansonia2022v44a1. http://adansonia.com/44/1


• 2021 Saliba E.M., Vignes Lebbe R., Dubois A., Ohler A.M. ZooNom: an online thesaurus for alleviating ambiguity in the terminology of zoological nomenclature. Zootaxa, 5071(1), 42–50.(doi.org/10.11646/zootaxa.5071.1.2)


• 2021 Bourgoin T., Nicolas Bailly, René Zaragueta, Régine Vignes-Lebbe. Complete formalization of taxa with their names, contents and descriptions improves taxonomic databases and access to the taxonomic knowledge they support. Systematics and Biodiversity, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2021, pp.1-9. ⟨10.1080/14772000.2021.1915895⟩. ⟨hal mnhn-03232322⟩


• 2021 Katrine Worsaae, Alexandra Kerbl, Maikon Domenico, Brett Gonzalez, Nicolas Bekkouche, et al.. Interstitial Annelida. Diversity, MDPI, 2021, 13 (2), pp.77. ⟨10.3390/d13020077⟩. ⟨hal-03176190⟩


• 2020 Saucède, T., Eléaume, M., Jossart, Q., Moreau, C., Downey, R., Bax, N., . . . Vignes-Lebbe, R. (2020). Taxonomy 2.0: Computer-aided identification tools to assist Antarctic biologists in the field and in the laboratory. Antarctic Science, 1-13. doi:10.1017/S0954102020000462


• 2020 Ksepka et al. (2020). Tempo and Pattern of Avian Brain Size Evolution. Current Biology, p. 2026-2036. https://doi.org/10.1016/j.cub.2020.03.060


• 2019 Darlu P., Tassy P., d'Haese C., Zaragüeta I Bagils R. (2019) La reconstruction phylogénétique : concepts et méthodes. Editions Matériologiques, 2019, 978-2-37361-172-4. ⟨hal-02413728⟩


• 2019 Bourgoin T, Vignes Lebbe R, Bailly N (2019) Visualisation of Taxonomic Knowledge: Exploring and reporting taxonomic data, training students in taxonomy. Biodiversity Information Science and Standards 3: e37730. https://doi.org/10.3897/biss.3.37730


• 2019 Kerner A, Vignes Lebbe R (2019) Multi-context Knowledge Base using Calculated Descriptors from Xper3: the Archaeocyaths Knowledge Base example. Biodiversity Information Science and Standards 3: e37083. ⟨10.3897/biss.3.37083⟩. ⟨hal-02557316⟩


• 2018 Rineau V., Zaragüeta I Bagils R., Laurin M.(2018) Impact of errors on cladistic inference: simulation-based comparison between parsimony and three-taxon analysis. Contributions to Zoology, Naturalis, 2018, 87 (1), pp.25-40. ⟨hal-01783500⟩


• 2018 Vignes-Lebbe, R. (2018). Natural language, formal language and the Description of the Living World. In T. Gaudin, D. Lacroix, M.-C. Maurel & J. C. Pomerol (Eds.), Life Sciences, Information Sciences. Wiley, ISTE Editions. pp. 250-258


• 2018 Troudet, J., Vignes-Lebbe, R., Grandcolas, P., & Legendre, F. (2018). The increasing disconnection of primary biodiversity data from specimens: How does it happen and how to handle it?. Systematic biology, 67(6), 1110-1119.


• 2018 Jouveau S., Delaunay M., Vignes-Lebbe R. & Nattier R., (2018). A multi-access identification key based on colour patterns in ladybirds (Coleoptera,Coccinellidae). ZooKeys . N° 758, p. 55-73. ISSN: 1313-2989. https://dx.doi.org/10.3897/zookeys


• 2017 Troudet, J., Grandcolas, P., Blin, A., Vignes-Lebbe R.& Legendre F. (2017). Taxonomic bias in biodiversity data and societal preferences. Scientific reports 7 (1), 9132.


• 2017 Joly, P., & Vignes-Lebbe, R. (2017). Les collections muséologiques. In M. Bouzeghoub & R. Mosseri (Eds.), Les Big Data à découvert (pp. 50-51). Paris: CNRS.


• 2017 Vignes-Lebbe, R. (2017). Langage naturel, langage formel et description du vivant. In T. Gaudin, D. Lacroix, M.-C. Maurel & J. C. Pomerol (Eds.), Sciences de la Vie et Sciences de l'Information . London: ISTE Editions.


• 2017 Florian Pellen, Sylvain Bouquin, Isabelle Mougenot, Régine Vignes-Lebbe. Building an OWL ontology with Xper3. Biodiversity Information Science and Standards, Sofia : Pensoft Publishers, 2017-, 2018, 2, pp.e25614. ⟨10.3897/biss.2.25614⟩. ⟨hal-01995613⟩


• 2017 Vignes-Lebbe R., Bouquin S., Kerner A., Bourdon E. Desktop or remote knowledge base management systems for taxonomic data and identification keys: Xper2 and Xper3. Biodiversity Information Science and Standards, Sofia : Pensoft Publishers, 2017-, 2017, 1, pp.e19911. ⟨10.3897/tdwgproceedings.1.19911⟩. ⟨hal-02557327⟩


• 2017 Pinel A., Bouquin S., Bourdon E., Kerner A., Vignes-Lebbe R. Three years of Xper3 assessment: towards sharing semantic taxonomic content of identification keys. Biodiversity Information Science and Standards, Sofia : Pensoft Publishers, 2017-, 2017, 1, pp.e20382. ⟨10.3897/tdwgproceedings.1.20382⟩. ⟨hal-02557322⟩


• 2016 Diep Thi M-H., Gurgand J., Vignes Lebbe R., Nguyen H-P., Nguyen B-L., Haevermans T. (2016). Bambous d'Indochine: descripteurs morphologiques pour l’identification. Science and Technology Commitee. Viet nam National University of Ho Chi Minh city. 269 p. ISBN 978-604-73-4238-9


• 2016 Vignes Lebbe R., Chesselet P., Diep Thi M-H. (2016). Xper3: new tools for collaborating, training and transmitting knowledge on botanical phenotypes. In "Botanists of the twenty-first century: roles, challenges and opportunities", Noëline R. Rakotoarisoa, Stephen Blackmore and Bernard Riera editors, UNESCO, Paris ISBN 978-92-3-100120-8. 228-239


• 2015 Lecointre, G. De Wever, P. Ekström, S. Gargaud, M. Gounelle, M. Klein, E. Longo, G. Martin, H. Pavé, A. Walliser, B. Zanda,B. & Zaragüeta Bagils, R. : Catégories et classification face au changement. Chap. 13 in Gargaud, M. & Lecointre, G. (dir.) : L’évolution, de l’univers aux sociétés. Objets et concepts. Editions Matériologiques.


• 2015 Cecca, F. & Zaragüeta Bagils, R.: Paléobiogéographie. Collection Géosphères dirigée par P. de Wever. EDP Sciences, Paris.


• 2015 Zaragüeta, R. : Les deux biogéographies. Biosystema 30, Editions Matériologiques.


• 2015 Rineau, V, Grand, A, Zaragüeta Bagils, R., Laurin, M.. :Experimental systematics: sensitivity of cladistic methods to polarization and character ordering schemes. Contributions to Zoology, 84 (2) 129-148


• Cavoto, P., Cardoso, V., Lebbe, R. V., & Santanchè, A. (2015). FishGraph: A Network-Driven Data Analysis. In Proc. 11th IEEE e-Science (pp. 1–10). Munich.


• 2015 Ung, V, Zaragüeta Bagils, R., Williams, D. : Comparative biogeography of Southeast Asia and the West Pacific region. Biological Journal of the Linnean Society.


• Grand, A.; Lebbe, R.V.; Santanche, A., "From Phenotypes to Trees of Life: A Metamodel-Driven Approach for the Integration of Taxonomy Models," in e-Science (e-Science), 2014 IEEE 10th International Conference on , vol.1, no., pp.65-72, 20-24 Oct. 2014 doi: 10.1109/eScience.2014.48


• 2014 Grand, A, Zaragüeta Bagils, R., Duque-Velez, L., Ung, V. : A cladistic re-analysis of the Gadiformes (Teleostei, Paracanthopterygii) using three-item analysis. Zootaxa 3889:525-552.


• 2014 Thacker RW, Díaz MC, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel MA, Mungall CJ. 2014. The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. Journal of Biomedical Semantics 5:39. doi: 10.1186/2041-1480-5-39.


• 2014 Corvez A & Grand A. 2014. Enabling comparisons of characters using an Xper2 based knowledge-base of fern morphology. Phytotaxa 183 (3): 145-158.


• 2014 Chrétiennot-Dinet M-J, Desreumaux N, Vignes-Lebbe R. An interactive key to the Chrysochromulina species (Haptophyta) described in the literature. PhytoKeys 2014;(34):47-60. doi:10.3897/phytokeys.34.6242.


• 2013 GBIF France (L’équipe GBIF France 2013 comprend Anne-Sophie Archambeau, Eric Chenin, Marie-Elise Lecoq, Pere Roca Ristol, et Régine Vignes Lebbe). Le GBIF : Ouvrir l'accès aux données primaires sur la biodiversité. Networks and Communication Studies, NETCOM, vol. 27 (2013), n° 1-2, pp. 154-164.


• 2013 Thomas Burguiere, Florian Causse, Visotheary Ung, and Régine Vignes-Lebbe, 2013: IKey+: A New Single-Access Key Generation Web Service Syst Biol (2013) 62(1): 157-161.PDF


• Zaragüeta-Bagils R., Ung V., Grand A., Vignes-Lebbe R., Cao N., Ducasse J, 2012 : LisBeth : New cladistics for phylogenetics and biogeography. C.R Palevol 11(8):563-566.


• Mathieu Bruno, Cêtre-Sossah Catherine, Garros Claire, Chavernac David, Balenghien Thomas, Carpenter Simon, Setier-Rio Marie-Laure, Vignes-Lebbe Régine, Ung Visotheary, Candolfi Ermanno and Delécolle Jean-Claude, 2012. Development and validation of IIKC: an interactive identification key for Culicoides (Diptera: Ceratopogonidae) females from the Western Palaearctic region. Parasites & Vectors 2012, 5:137 doi:10.1186/1756-3305-5-137


• Kerner, A., 2012 : Archaeocyatha, a computer-aided identification of genera. Geologica Belgica, 15:(4)209-214.


• Kerner, A., Vignes-Lebbe, R., & Debrenne, F., 2011 : Computer-aided identification of the Archaeocyatha genera now available online. Carnets de Géologie/Notebooks on Geology, Brest, Letter, 2:99–102.


• Kerner, A., Debrenne, F., & Vignes-Lebbe, R., 2011: Cambrian archaeocyathan metazoans: revision of morphological characters and standardization of genus descriptions to establish an online identification tool. Zookeys, 150:381-395.


• Nimis P.L., Vignes Lebbe R. (eds.), 2010 : Tools for Identifying Biodiversity: Progress and Problems. ISBN 978-88-8303-295-0, EUT, 455 pp. Télécharger


• Ung V., Dubus G., Zaragüeta-Bagils R. & Vignes-Lebbe R., 2010 : Xper²: introducing e-Taxonomy. Bioinformatics, Vol. 26, Num.5: 703-704.


• Diep M.H., Vignes Lebbe R., Nguyen H.P. et Nguyen Thi B.L., 2010. « Indochinese bamboos: biodiversity informatics to assist the identification of « vernacular taxa », in Tools for Identifying Biodiversity: Progress and Problems 2010. 213-216.


• Zaragüeta-Bagils R., Bourdon E., Ung V., Vignes-Lebbe R. et Malécot V., 2009 : Comments on the International Code of Area Nomenclature. Journal of Biogeography, 38 : 1617-1619.


• Khalloufi, B., Zaragüeta Bagils, R. & Lelièvre, H., 2010 : Rhombichthys intoccabilis, gen. et sp. nov. (Ellimmichthyiformes, Clupeomorpha, Teleostei) from the Cenomanian (Upper Cretaceous) of Ein Yabrud, Middle East. Anatomical description and phylogenetic implications. Journal of Vertebrate Paleontology, 30(1) : 57–67


• Cao N., Bourdon E., El Azawi M., & Zaragüeta-Bagils R., 2009 : Three-item analysis and parsimony, intersection tree and strict consensus: a biogeographical example. Bulletin de la Société Géologique de France, 180 (1) : 13-15


• Morille C. H., Dequaire A., Hortault G., Péquignot A. & Aragon S. 2008 : Un conservatoire de faune. La collection zoologique de l’Université Pierre et Marie Curie (Paris VI) in Actes des 2ème Journées Cuénot, Aujourd’hui, les collections scientifiques. Muséum-Aquarium de Nancy – Université de Nancy : 81-97


• Cao N., Le Péchon & Zaragüeta-Bagils R., 2008 : Does minimizing homoplasy really maximize homology? MaHo: A method for evaluating homology among most parsimonious trees. Comptes Rendus Palevol, 7 : 17-26


• Lelièvre H., Zaragüeta-Bagils R. & Rouget I., 2008 : Temporal information, fossil record and phylogeny. Comptes Rendus Palevol 7 : 27–36


• Zaragüeta-Bagils R. & Bourdon E., 2007 : Three-item analysis: Hierarchical representation and treatment of missing and inapplicable data.Comptes Rendus Palevol 6 : 527–534


• Cao N., Zaragüeta-Bagils R. & Vignes-Lebbe R., 2007 : Hierarchical representation of the hypotheses of homology. Geodiversitas 29 (1) : 5-15.


• Jacques F. Gallut C. Vignes-Lebbe R. & Zaragüeta-Bagils R., 2007 : Resolving phylogenetic reconstruction in Menispermaceae (Ranunculales) using fossils and a novel statistical test. Taxon 56 (2) : 379-392


• Zaragüeta-Bagils R., Bourdon E., Rouget I & Lelièvre H., 2006 : Arbres phylogénétiques et chronologie. Géochronique 98: 44-45.


• Zaragüeta-Bagils R., Lelièvre H. & Tassy P., 2004 : Temporal paralogy, cladograms, and the quality of the fossil record, Geodiversitas 26, 381-389


• Vignes-Lebbe R. 2000 – Caractère pour le biologiste, caractère pour l'informaticien. In Barriel V. & Bourgoin T. (eds). Biosystema 18. Société Française de Systématique. Paris: 61-70.


• Vignes-Lebbe R., Rechenmann F., Gautier C. & Tillier S. 2000 – Informatique et Systématique, in Tillier S. (ed) Systématique : ordonner la diversité du vivant. Editions Tec & doc. Paris: 132-143.


• Lebbe J. 1991. Représentation des concepts en biologie et médecine. Introduction à l'analyse des connaissances et à l'identification assistée par ordinateur. Thèse de doctorat, spécialité Sciences de la vie. Université Pierre et Marie Curie Paris 6. Paris. 281


• Lebbe J. & Vignes R. 1991 – Génération de graphes d'identification à partir de descriptions de concepts. In Curie U. P. E. M. (ed) Induction Symbolique et Numérique. Kodratoff, Y. Et Diday, E. Paris: 193-239.


• Vignes R. 1991. Caractérisation automatique de groupes biologiques. Thèse de doctorat. Université Pierre et Marie Curie. Paris. 268.